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Image Search Results


Functionality schema of MethParquet package. MethList consists of the open connection to methylation Parquet database, subject, and CpG annotation objects. Then it can be utilized as input to calculate methylation risk score, perform association analysis, or extract a subset of methylation data given different criteria.

Journal: Bioinformatics

Article Title: MethParquet: an R package for rapid and efficient DNA methylation association analysis adopting Apache Parquet

doi: 10.1093/bioinformatics/btae410

Figure Lengend Snippet: Functionality schema of MethParquet package. MethList consists of the open connection to methylation Parquet database, subject, and CpG annotation objects. Then it can be utilized as input to calculate methylation risk score, perform association analysis, or extract a subset of methylation data given different criteria.

Article Snippet: To compare computational performance between packages relying on Parquet and row-based data format, we conducted EWAS using MethParquet in RStudio (v2023.6.2.561) and GLINT v1.0.4 ( Rahmani et al. 2017 ) in Python v2.7 ( ) on a personal computer MacBook Pro with a 5 GHz processor and 8 GB of RAM.

Techniques: Methylation

Benchmark results of the cascade oscillators model. <xref ref-type= a " width="100%" height="100%">

Journal: Bioinformatics

Article Title: MethParquet: an R package for rapid and efficient DNA methylation association analysis adopting Apache Parquet

doi: 10.1093/bioinformatics/btae410

Figure Lengend Snippet: Benchmark results of the cascade oscillators model. a

Article Snippet: To compare computational performance between packages relying on Parquet and row-based data format, we conducted EWAS using MethParquet in RStudio (v2023.6.2.561) and GLINT v1.0.4 ( Rahmani et al. 2017 ) in Python v2.7 ( ) on a personal computer MacBook Pro with a 5 GHz processor and 8 GB of RAM.

Techniques:

Journal: iScience

Article Title: Binocular visual deficits at mid to high spatial frequency in treated amblyopes

doi: 10.1016/j.isci.2021.102727

Figure Lengend Snippet:

Article Snippet: The experiments were conducted on a MacBook Pro (13-in., 2017; Apple, Inc., Cupertino, CA, USA) running MATLAB R2016b (v9.1.0 MathWorks, Inc., Natick, MA, USA) with Psychtoolbox extension 3.0.14 ( ; ) and Psykinematix (v2.0.1 GPU edition; KyberVision, Sendai, Miyagi, Japan).

Techniques: Software